FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458333
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27340.5965095247341998No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA21850.4767276194382687No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18080.3944730141621921No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17110.37330936240680906No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16780.3661093571704416No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15940.34778207111423354No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14490.3161456844695887No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9850.21490924720672525No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9460.2064001501092001No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8870.19352741347448252No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8850.19309104952076328No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8800.1920001396364652No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8590.1874183181224132No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7440.16232739078355693No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7370.1608001169455396No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7050.15381829368603178No Hit
CAGCGCTTCCACCTCGCGAGAAACTGCATCAGTGAAGCCGGTGC6270.13680009949098146No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6190.13505464367610448No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5890.12850918437031592No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5800.12654554657857933No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5770.12589100064800046No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT5680.12392736285626389No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5520.12043645122650998No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5490.11978190529593113No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5380.1173819035504753No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG5210.11367280994386178No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT5210.11367280994386178No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.11236371808270407No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4890.10669098668435395No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4870.10625462273063471No Hit
GGATTCCTTCAGCAGGTTCACCTGTTCGCAGATCTGGTTGGTAA4850.10581825877691547No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4710.1027637111008808No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4690.10232734714716156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)