FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458333
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38080.8308369678814311No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37160.8107642260103461No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC21960.47912762118372454No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18680.4075639327737693No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17290.3772366379902822No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17240.37614572810598407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16780.3661093571704416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16200.35345480251258365No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10110.22058197860507534No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10030.2188365227901984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9910.21621833906788293No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9110.19876378091911337No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9030.19701832510423645No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8870.19352741347448252No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8580.18720013614555356No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8430.18392740649265926No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7760.16930921404306476No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7630.1664728483438897No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7370.1608001169455396No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7340.16014557101496074No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7320.1597092070612415No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6790.14814556228768166No Hit
TCCACCGGTGGTAACGGCCTGGTTGGTTTCG6040.1317819140232102No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5950.12981827623147363No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5870.12807282041659668No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5720.12480009076370237No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5710.12458190878684276No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5600.12218190704138694No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5450.11890917738849263No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5420.11825463145791379No Hit
GGCGAAGGTGTAGTTGGCTTCGCGGATGTTC5340.11650917564303682No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5190.11323644599014254No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5180.11301826401328291No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5170.1128000820364233No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5050.11018189831410787No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4850.10581825877691547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)