FastQCFastQC Report
Wed 31 May 2023
EGAF00007929873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502994
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40160.7984190666290254No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11010.21888929092593548No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8440.16779524209036292No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7840.15586667037777788No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6510.1294250030815477No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6190.123063098168169No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5460.10855000258452388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)