FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences596511
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56900.9538801463845595No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41340.6930299692713127No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25700.4308386601420594No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24360.408374698873952No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23320.3909399826658687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19330.324051023367549No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17290.2898521569593855No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15770.26437064865526366No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15400.25816791308123405No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15310.25665913956322683No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11550.19362593481092552No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10960.18373508619287823No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10830.18155574666686783No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10650.1785381996308534No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10510.17619121860284218No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9770.1637857474547829No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9440.15825357788875646No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8860.14853037077270997No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8610.14433933322268994No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7160.12003131543257374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7010.11751669290256174No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6710.11248744784253768No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6610.11081103282252969No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6560.10997282531252568No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6270.10511122175450244No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6000.1005849012004808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)