FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580600
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61891.065966241818808No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44540.7671374440234241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39040.6724078539441957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23250.4004478126076473No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23070.39734757147778155No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22980.3957974509128488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17780.30623492938339647No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15960.27488804684808815No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15530.26748191526007575No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15470.26644850155012056No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14640.2521529452290734No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10480.18050292800551154No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10270.17688598002066827No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10240.17636927316569065No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10020.17258008956252152No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9210.15862900447812606No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8810.15173957974509128No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8660.14915604547020322No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8430.14519462624870824No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7420.1277988287977954No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.11694798484326559No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6750.1162590423699621No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6510.11212538753014123No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6300.10850843954529797No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6000.10334137099552188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)