FastQCFastQC Report
Wed 31 May 2023
EGAF00007929878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547871
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24890.4543040241224668No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16190.29550751910577494No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14370.2622880203551566No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG14190.25900257542377675No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13730.2506064383769172No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13250.24184525189323763No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12680.23144134294386817No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12550.22906852160453828No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12520.22852094744930831No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10420.19019075658321027No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9840.17960432291543083No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9490.17321595777108115No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9000.1642722465689916No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8420.15368581290121214No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8420.15368581290121214No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8340.1522256151539322No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8110.14802754663050244No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8010.14620229944640253No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC7980.14565472529117254No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7940.1449246264175326No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7920.14455957698071262No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7580.13835373655477293No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7390.1348857669049831No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7300.1332430444392932No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7150.13050517366314335No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6950.1268546792949435No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6340.11572067147193409No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6100.1113400782300943No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5810.10604686139620459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)