FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007929879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547871
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44540.8129650957980985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24220.44207486798899737No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19080.34825716272626217No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16300.29751529100828483No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16250.29660266741623487No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16200.2956900438241849No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15540.2836434124091255No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG14400.26283559451038657No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14200.25918510014218676No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA13790.25170158668737713No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13500.2464083698534874No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12580.22961609575976827No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11490.20972090145307928No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9830.17942179819702084No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9710.17723150157610096No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9310.16993051283970131No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8600.15697125783259197No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC8200.14967026909619235No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7920.14455957698071262No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA7880.14382947810707264No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7540.13762363768113295No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7520.13725858824431297No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7450.13598091521544306No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7360.13433819274975312No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7250.13233042084724325No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6910.12612458042130356No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6250.11407794900624418No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC6030.11006240520122439No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)