FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575398
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15620.2714642734246556No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12740.22141196180730555No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11640.20229475945345654No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8680.15085210584673564No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7700.13382041647694293No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7400.12860663401680228No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6810.11835286184519236No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6640.11539838511777935No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6420.11157494464700955No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)