FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543468
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44500.8188154592358703No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20810.3829112293640104No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10980.20203581443617655No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9790.18013940103189147No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9780.17995539755790588No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9710.17866737324000678No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9610.1768273385001509No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9520.1751713072342806No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7030.12935444221186895No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6890.1267783935760707No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6700.12328232757034452No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5780.10635400796367034No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5680.10451397322381448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5470.1006499002701171No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5450.10028189332214593No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5450.10028189332214593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)