FastQCFastQC Report
Wed 31 May 2023
EGAF00007929884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558799
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA45980.8228361181748715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA42260.7562647749906496No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT29430.5266652230945296No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC13730.24570552202133503No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12680.2269152235419176No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11060.19792447731653062No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10840.19398746239703363No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10830.19380850717342016No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10170.18199746241492915No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9740.17430238779954865No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9500.1700074624328247No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8270.14799596992836422No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8160.14602746246861573No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7900.14137462665466474No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7880.14101671620743772No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7710.13797447740600824No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7660.13707970128794073No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC7390.13224791025037624No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7320.13099522368508174No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6930.12401596996415526No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6450.11542611923070728No Hit
ACGACGACAGTCTTCCGGTTTTACGTACACTTTGGAAACTTCAA6010.10755208939171329No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG5940.1062994028264188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)