FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44030.8111777829772416No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28970.5337229246616101No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG26760.4930074374851462No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG18800.34635799046041665No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17980.3312508866211857No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17110.3152226179137089No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17040.31393298709816486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15530.28611380807714204No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13210.24337175819053744No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10780.19860314559379208No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10470.19289192341066821No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9370.17262629630926085No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8580.15807189139097735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8230.15162373731325687No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7840.1444386513409397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7210.13283197400104277No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7080.1304369453436037No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6910.12730498479156802No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6600.12159376260844412No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6580.12122529666114583No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5950.10961861932124889No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5830.10740782363745899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)