FastQCFastQC Report
Wed 31 May 2023
EGAF00007929889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506433
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51891.0246172741507762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40690.8034626495508784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21810.4306591395110508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14220.28078738944737014No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9190.18146526786366607No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8180.1615218597524253No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7720.1524387233849295No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6940.13703688345743661No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6610.13052072041118962No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6420.12676899017244136No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6420.12676899017244136No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6220.12281980044744319No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5780.11413158305244721No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5660.1117620692174483No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5110.10090179747370334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)