FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513526
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT59121.151256216822517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39200.7633498595981508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21930.4270475107394757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14900.29015083949011344No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8820.17175371840958395No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8370.16299077359276842No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7830.1524752398125898No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7050.13728613546344295No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6590.12832845853958708No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6410.1248232806128609No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6390.1244338163987802No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6250.12170756690021538No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5920.115281407367884No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5850.1139182826186016No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5320.10359748094546334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)