FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526214
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24070.45741846473107906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21500.4085790191823099No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13260.25198873462127575No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13240.25160866111505964No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12010.22823414048276938No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11950.22709391996412107No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11500.21854226607425875No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10970.20847031815953207No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9540.18129506246508076No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9230.17540392311873118No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7560.14366778534968663No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7520.14290763833725442No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7350.13967701353441755No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7290.13853679301576927No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6920.13150543315077137No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6800.12922499211347477No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6430.12219363224847686No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6140.11668256640834336No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5430.10318995693767175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)