FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526214
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50080.9517040595651199No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45140.8578259035297426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19160.36411041895502594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12900.24514741150938593No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12800.2432470439783054No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12700.2413466764472249No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11150.21189097971547696No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11040.20980057543128844No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9420.17901462142778413No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9090.17274340857521844No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8350.15868068884522266No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8020.15240947599265697No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8000.1520294024864409No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7850.1491788511898201No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7660.14556815288076713No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7110.13511613145982432No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7020.13340580068185187No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5520.10490028771564422No Hit
ATCCCAAAAGGCTCCTACTCCGGTTCTACTT5340.10147962615969928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5280.10033940564105098No Hit

[OK]Adapter Content

Adapter graph