FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533630
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24090.4514363885088919No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20920.3920319322376927No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13750.2576691715233401No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13690.2565447969566928No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12930.2423027191124937No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11940.22375053876281317No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11650.21831606169068454No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11270.21119502276858498No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9230.1729662875025767No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8880.16640743586380075No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7950.14897963008076756No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7770.14560650638082567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7580.14204598691977588No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7200.1349249479976763No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6760.1266795345089294No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6520.1221820362423402No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6050.11337443547026965No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6030.11299964394805388No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5350.1002567321927178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)