FastQCFastQC Report
Sun 21 May 2023
EGAF00007929897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533630
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53220.9973202406161572No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42900.8039278151528212No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19660.36842006633809943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13480.2526094859734273No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13270.2486741749901617No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12830.24042876150141482No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11790.22093960234619492No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11210.21007064820193766No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9780.1832730543635103No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8890.16659483162490862No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8410.15759983509173023No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8330.15610066900286715No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8060.1510409834529543No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8020.15029140040852276No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7970.14935442160298334No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7010.1313644285366265No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.12386859809231116No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.10925172872589621No Hit
ATCCCAAAAGGCTCCTACTCCGGTTCTACTT5520.10344246013155181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)