FastQCFastQC Report
Wed 31 May 2023
EGAF00007929898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537511
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18500.34417900284831376No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC18150.33766750819983216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16440.3058542057743935No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15060.28018031258895165No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11660.21692579314655885No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA9430.17543827010051888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8330.15497357263386238No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6950.12929967944842058No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6930.12892759403993592No Hit
GAAGGTGCCGGTGCCAGCCACGCTCGGTGCAAAAATGGCGTTGG6400.11906733071509233No Hit
CTTGGTCACACGCGGGCCGTAAGTAGCGGTACCGTCCGCGTGGG6040.1123697933623684No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5730.10660246953085611No Hit
CCAACCGGTCTGCATTTCACCATCGCTGTTCAGCAGGTACCAAT5710.10623038412237146No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5440.10120723110782848No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5410.10064910299510149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)