FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537511
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41740.7765422475074928No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41150.7655657279571954No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18630.3465975580034641No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15000.2790640563634977No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12520.2329254657113994No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG9440.1756243128047612No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8510.15832234131022435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7370.13711347302659851No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7290.13562513139265986No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7070.13153219189932858No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6970.12967176485690526No Hit
TCTGCGGACGGCGTAAACTGGACCACTCTGT6590.12260214209569664No Hit
GACACCGGCTGGCGTAAAATTAATAACGATT6200.11534647663024572No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6150.11441626310903406No Hit
CAGGTCTCTTATGGTGCACGTCCGACCCAGA5790.10771872575631011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)