FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579429
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10320.1781063771402536No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8170.14100088190270077No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7670.132371696963735No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6770.1168391640735966No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6470.11166165311021713No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6440.11114390201387918No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6000.1035502192675893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)