FastQCFastQC Report
Wed 31 May 2023
EGAF00007929903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences579429
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10550.18207580221217787No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.17448211946588796No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8730.15066556903434244No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8100.13979279601124556No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7910.13651370573443855No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7200.12426026312110716No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6800.11735691516993453No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6170.10648414214683767No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6100.10527605625538244No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5820.10044371268956162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)