FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417362
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58861.410286513865661No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22650.5426943516659398No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG14820.3550874300966547No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10560.25301776395551107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10240.24535055898716224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8460.20270173135072192No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8180.1959929270034167No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7980.19120092389819868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7810.18712772125876337No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5640.13513448756714797No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5490.13154048523823444No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5240.12555048135671193No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5150.1233940799593638No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4580.10973687110949247No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4420.10590326862531807No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4420.10590326862531807No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4400.10542406831479625No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4390.10518446815953536No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4300.10302806676218727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)