FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007929908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373198
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13140.35209191903493586No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9530.25536042529702735No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8540.2288329519450801No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6480.17363437103092727No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5530.14817871478410924No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4820.1291539611680663No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4030.10798557334176495No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG3810.10209057926355447No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC3740.1002148993295784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)