FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426280
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25580.6000750680304026No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24630.5777892465046448No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22990.5393168809233368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21960.5151543586375152No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA15460.36267242188233084No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12530.2939382565449939No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12410.2911232054048982No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT9960.2336492446279441No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9670.22684620437271275No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8890.20854837196209067No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8570.2010415689218354No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7950.1864971380313409No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7910.185558787651309No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA7870.18462043727127708No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7810.18321291170122925No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7590.17805198461105376No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7580.1778173970160458No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7500.175940696255982No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG7190.1686684808107347No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6970.16350755372055928No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6420.15060523599512057No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6330.14849394764004878No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6310.14802477245003284No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6240.146382659284977No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6230.14614807168996902No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5990.14051796940977762No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5840.136999155484658No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5740.13465327953457823No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5730.13441869193957023No Hit
GACTACCATGCTGTCTTTAACGAAGGTGGAGCAGTGATACAGTT5310.12456601294923524No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5210.12222013699915547No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5190.12175096180913954No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5130.12034343623909168No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5120.1201088486440837No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5110.11987426104907571No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4860.11400957117387632No Hit
ACGGCCACCGCGCGGCGCCGCATCATCACGCATCAGTTCTGCCA4850.11377498357886834No Hit
TTTACCACGTTTGCTGCGGCCCTTACGAGACGGCAGTTTGCCAG4830.11330580838885239No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4780.11213287041381252No Hit
TTCGTCACCGGTGCTCGGCAGCTTACGCTTGTTGTTAGTGGATT4740.11119452003378061No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4730.11095993243877263No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4730.11095993243877263No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4710.11049075724875669No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4700.11025616965374871No Hit
TTCCCAGGCGTCGGACGCTGCGTTATCAGACTGAACAACTTCCG4530.10626818053861313No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG4520.10603359294360515No Hit
AACGTCATTTTTGCGCGCCTGTACTGGGTGTTTAACCACAATCG4450.1043914797785493No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4400.10321854180350944No Hit
TGAAGGTCGGTACGGTGTGCGTGTCACTGTGGTCAGAAATTGTA4380.10274936661349347No Hit
TTTGACGATGTACTTACGGTTGTTGTGAATATAGATACCTTTGT4370.10251477901848549No Hit
TTCCGGACGGTTAGTGGCCGCCAGAATGATTACGCCGTTGTTAC4360.10228019142347752No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4270.10016890306840573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)