FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426280
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56801.3324575396453036No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT25390.595617903725251No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22820.5353288918082012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21750.5102280191423477No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17750.4163929811391574No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC16290.38214319226799287No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13070.3066059866754246No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12970.30426011072534487No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA10280.2411560476681993No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10070.2362297081730318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9580.224734916017641No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9210.2160551750023459No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9070.21277094867223423No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA9030.21183259829220233No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8950.2099558975321385No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8730.20479497044196301No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8040.18860842638641268No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8000.1876700760063808No Hit
GAACCGATCTACGCTACCATCGACGACCTGG7770.18227456132119735No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7650.17945951018110162No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7540.17687904663601386No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7240.1698414187857746No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6930.16256920334052735No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6740.1581120390353758No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6630.15553157549028807No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6410.1503706484001126No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6170.14474054611992118No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6160.1445059585249132No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6150.14427137092990522No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6110.14333302054987332No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5920.1388758562447218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5900.13840668105470583No Hit
TACGCAACCGACCCGGAATACGATCGTAAGC5660.1327765787745144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5650.13254199117950644No Hit
TTCGGTCAGGCTAAAGAAAAAGCACCGTGCA5510.12925776484939477No Hit
CAGGACCAGGCCCAGACCAAAATGGACGATA5500.12902317725438678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5260.12339307497419537No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5240.12292389978417942No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5220.12245472459416346No Hit
AAACCGGCAGCGTCCCTGCTGAAACGTAACC5030.11799756028901191No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5020.11776297269400393No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5000.117293797503988No Hit
TCCCAGGAAATCACCTTCGTTTACGAGAAAA4960.11635544712395608No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4910.11518250914891622No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4880.11447874636389228No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4850.11377498357886834No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4840.11354039598386037No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC4790.1123674580088205No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4690.11002158205874074No Hit
TTCATCAACATGTACACCGCACACTCCCAGA4690.11002158205874074No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4590.10767570610866098No Hit
TTCAACAAAAAACAGAGCTCCGACGTAAAAG4450.1043914797785493No Hit
ACCAAGACTTTCGCGAAAAAACACAACCTGA4420.10368771699352539No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4390.10298395420850145No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4340.10181101623346159No Hit
ATCCTGGCATTCACCCTGTACACTGAAGCTA4290.10063807825842169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)