FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450634
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26120.5796278132586534No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24840.551223387494064No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20510.45513654096228867No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17310.3841254765508151No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15820.3510609496842227No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14460.32088124730934636No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14030.3113391355290546No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13880.30801049188476676No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13020.2889262683241833No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12540.27827460866246223No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG11700.2596342042544504No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11510.25541792230501914No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11330.25142354993187377No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9860.21880284221785307No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9700.21525228899727938No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9410.2088169112849896No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA8680.19261751221612217No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8630.1915079643346929No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8430.1870697728089758No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8090.17952484721525672No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7950.17641811314725475No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7670.1702046450112508No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7450.165322634332962No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7280.16155017153610246No Hit
TGGGCGCAGTTCCGGCGGGATTACCGGAACCGCGTCCAGTACCA6550.14535077246723505No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6450.14313167670437651No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6240.13847157560237355No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6080.13492102238179987No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5900.13092665000865447No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5590.12404745314379298No Hit
TTCCAGCGCTACTGGGGAGTGACAGCTGTGGCCTTCACCGCAAT5150.11428343178721534No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5120.11361770305835778No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5070.1125081551769285No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5060.11228624560064265No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4580.1016345859389216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)