FastQCFastQC Report
Wed 31 May 2023
EGAF00007929920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396391
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14180.3577275972461534No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13900.35066386471943106No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13490.3403205420910162No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12820.3234180392592163No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12430.31357926895413873No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC9630.24294194368691518No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8950.22578716469344665No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8820.22250757459175408No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5910.14909521154617536No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5630.142031479019453No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5620.14177920285778436No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4900.12361531921764117No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4880.12311076689430385No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA4880.12311076689430385No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4260.10746964487084723No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4150.104694607092492No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG3990.10065818850579353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)