FastQCFastQC Report
Wed 31 May 2023
EGAF00007929921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396391
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58991.4881770776833985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31550.7959312900646079No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28160.7104096712589337No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13750.3468797222944012No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12190.307524641074091No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11570.29188351905063437No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9720.24521242914193309No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8860.22351667923842874No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.14934748770784403No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5350.13496774649273066No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5050.127399461642671No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4940.12462442386431578No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4890.12336304305597251No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4710.11882207214593671No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4640.11705613901425614No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4530.1142811012359009No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4060.1024241216374741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)