FastQCFastQC Report
Sun 21 May 2023
EGAF00007929922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417751
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22800.5457796630049958No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20990.5024524178278448No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19020.45529513992785176No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15750.37701884615476683No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15380.36816189548319456No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14540.3480542236882736No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14450.345899830281675No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13670.3272284207578198No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12100.28964622466493195No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11550.2764804871801624No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10810.2587665858370177No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA9500.22740819291874825No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9230.22094501269895225No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8810.2108911768014918No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8740.20921553748524838No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8610.20610363589793917No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8570.2051461277172287No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8550.2046673736268734No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8530.20418861953651815No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8450.20227360317509716No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8390.20083734090403138No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7850.18791098046443933No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7580.18144780024464335No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6970.16684580048880793No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6790.1625370136756106No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6170.14769563687459755No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6060.14506248937764363No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6050.14482311233246598No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5670.13572678461571605No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5640.13500865348018315No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5620.13452989938982793No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5610.13429052234465028No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5510.131896751892874No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5340.12782734212485428No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5310.12710921098932138No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5190.12423668644718983No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5150.12327917826647933No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5100.12208229304059116No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4820.11537973577561754No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT4750.11370409645937413No Hit
CGGCAGCTTCTCAGTCGGCAGTTTGGACAGGGTTTCGGAACGCT4650.11131032600759781No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4590.10987406373653204No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG4570.1093953096461768No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4540.10867717851064392No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4500.10771967032993338No Hit
CAGGGTCAGCAGACGGTGAGACGGGTGGATATCCAGGTCGCACG4500.10771967032993338No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4430.10604403101368998No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4430.10604403101368998No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC4410.10556527692333471No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4230.10125649011013738No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4180.10005960488424923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)