FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417751
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28280.6769582837623369No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22960.5496096957278379No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21360.5113093684994171No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18390.4402143860816611No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17830.4268092715517138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16550.39616900976897723No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15530.371752551160859No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15260.36528937094106295No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14360.3437454368750763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14170.33919727301670133No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12330.2951518967040175No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11830.283183044445136No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10420.2494308810750902No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9420.22549317655732723No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA9350.2238175372410838No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9210.22046625860859698No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8950.21424245543397863No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8630.20658238998829448No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8630.20658238998829448No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8570.2051461277172287No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8420.20155547203956425No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8060.19293789841316958No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7960.19054412796139325No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7730.18503845592230778No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7060.1690001938954066No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7020.16804268571469608No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6990.16732455457916318No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6940.16612766935327503No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6460.1546375711847488No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6320.151286292552262No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6190.1481743909649528No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6140.14697750573906465No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5970.14290809597104495No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5850.1400355714289134No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5780.13835993211266998No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.1376418009771371No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5670.13572678461571605No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5510.131896751892874No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5440.13022111257663058No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5130.12280042417612405No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5100.12208229304059116No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5070.12136416190505828No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4910.1175341291822162No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4720.11298596532384124No Hit
CGTCTGGTCCGCCAGCACAACATTCAGGTGC4690.11226783418830835No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG4620.11059219487206493No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4560.10915593260099915No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4510.107959047375111No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4470.10700153919440049No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4460.10676216214922288No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4450.10652278510404523No Hit
GACTTCGCTCATCAGTGCCTGCAGGCGGCAA4380.10484714578780183No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4340.1038896376070913No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4270.1022139982908479No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)