FastQCFastQC Report
Sun 21 May 2023
EGAF00007929924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386804
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20870.5395497461246522No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19420.5020630603613199No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16560.42812380430398855No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14760.3815886081839898No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14490.37460832876599004No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13050.337380171869991No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12740.3293657769826579No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12240.3164393336159916No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11660.30144465931065867No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11120.287484100474659No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9390.24275860642599353No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA9330.24120743322199356No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8840.22853951872266057No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8200.21199367121332766No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8040.20785720933599447No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7890.20397927632599455No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7730.1998428144486613No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7610.19674046804066142No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7610.19674046804066142No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7560.1954478237039948No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7520.19441370823466148No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6890.17812638959266192No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6870.17760933185799527No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6440.16649259056266225No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6390.1651999462259956No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6140.1587367245426624No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6100.15770260907332914No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5940.1535661471959959No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5520.1427079347679962No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5420.14012264609466293No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5270.13624471308466304No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5210.13469353988066307No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5090.13159119347266315No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT4980.1287473759319966No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4910.1269376738606633No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4850.12538650065666332No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4820.12461091405466333No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG4810.12435238518733002No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC4760.12305974085066339No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4720.12202562538133008No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4640.11995739444266348No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4590.11866475010599684No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4580.1184062212386635No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4290.11090888408599704No Hit
CAGGGTCAGCAGACGGTGAGACGGGTGGATATCCAGGTCGCACG4280.11065035521866372No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4180.10806506654533045No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4170.10780653767799711No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG4160.1075480088106638No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG4160.1075480088106638No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG3940.10186037372933061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)