FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422333
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15050.3563538724182103No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11860.2808210582644501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11590.27442799875927293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10980.25998441987720594No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8690.20576180407403635No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7750.1835044857967528No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7540.17853210618161497No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6220.1472771486007487No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.14183120902226443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5780.1368588294071266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5490.12999220993860297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4880.11554863105653596No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4620.10939235153303199No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4620.10939235153303199No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4430.10489353188124063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)