FastQCFastQC Report
Wed 31 May 2023
EGAF00007929929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399443
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58331.4602834446967403No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11260.28189253535548253No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10760.2693751048334806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10610.26561987567688006No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7740.19376982448058921No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7450.18650971477782813No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7060.17674611897066664No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6140.1537140468101832No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5040.12617569966177902No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5000.12517430522001888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4410.11040373720405665No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4270.10689885665789611No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG4080.10214223305953539No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4070.10189188444909537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)