FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386279
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC31530.8162493948674404No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30390.7867370475744215No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG23650.6122517662104334No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC22830.5910235865786129No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22560.5840338201144769No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21790.5641000416797185No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21220.5493438680332091No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG20640.5343288141472873No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG20160.52190256265549No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG19440.5032631854177938No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17030.44087304771939456No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16760.4338832812552585No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16040.4152439040175624No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14300.37019874235979694No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG13640.3531126465585755No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11030.2855449040719273No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11020.28528602383251483No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10970.28399162263545263No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10640.2754485747348419No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9520.24645398792064802No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9380.2428296645688738No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9190.23791094002003732No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8840.22885013164060172No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8220.2127995567970301No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8150.21098739512114298No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7670.19856114362934563No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7310.1892414550104976No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT7290.1887236945316727No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6770.17526192208222555No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6630.1716375987304513No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6390.1654244729845526No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5870.15196270053510547No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5760.14911501790156856No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG5690.14730285622568143No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5670.14678509574685655No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5560.14393741311331965No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5540.14341965263449477No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5400.1397953292827205No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5350.1385009280856583No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5350.1385009280856583No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5340.13824204784624586No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5120.13254668257917207No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4860.12581579635444845No Hit
ATCCGGGTGGTTACGGATTGCTTCCAGAGTTTCATCGTCGAAAT4770.12348587419973645No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG4760.12322699396032401No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4590.11882602989031245No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4500.11649610773560043No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4430.11468394605971331No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4340.1123540239050013No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4250.1100241017502893No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG4140.10717641911675241No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4020.10406985624380305No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT3910.10122217361026614No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG3900.1009632933708537No Hit
TTCTACAACCAGTTTGAAGGATTTGTCGCCGGCAGAACCAGACA3890.10070441313144125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)