FastQCFastQC Report
Sun 21 May 2023
EGAF00007929932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430172
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTCGGTTTCTGGGACGCCAGGGTCCATTCGATCCATGGCT258746.014803380973192No Hit
ACGTACACCGGGTAACGGGAATAGCTTTCTTCCATAACGATGTC161123.745478552764941No Hit
TGCCTTCTGACGTTGGGCTTCTGCAATCAGGTGGCCCAGGTTGG104752.4350724826348533No Hit
AGCCAGGCCTACCAGACCGTATTTTGCACGGAAACGCAGGCCGT86632.0138456245408816No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT74051.7214044614712254No Hit
CCATTCGGTGCGACCCAGTGGCTGGGATTCGTAGGAGCTACGGT66121.5370595947667445No Hit
AACCTGCTTACCGTTAGTTTTCATACGGTAGGAGAACCAGCCTG62731.45825390773923No Hit
TTCATCGAAAACAGAGGCCAGCATGGTATACAGCTCTGGGTTGG58811.36712756757762No Hit
TGCGGTACAAACCAGGACCAGGTACTGTGCATTGTTGAAGCTAC48381.1246664125047654No Hit
GGCACGGCGCAGGCCACGCAGCTGGTACGGGATGTTTTTAGTTT39190.9110309364626243No Hit
AGCAGCAAATTCCTGGGCGTCACGGTAATCGCGGTTTTCCATTT30490.7087862529406842No Hit
GCCAAAGGTAACCGGCATACGGTATTTAATGTCGGACTGCGCGT25540.5937160019713045No Hit
TTCGTCCGGCTGCAGCAGACCGAAACGGGTACGCAGATCGTCTT24420.5676799047822731No Hit
AACCAGGATCGGTTCGCCCGGTTCACCATCAGAGCGGGCGGAGC21860.5081688254930586No Hit
CATCTCACCGAACGGTTTCACGGTGCAAACCAGGTAATAATCGT21590.5018922663492743No Hit
ATCAGAGGAATAGATGTGGTAACCAGTTCTTCCAGCGGCGGTTC18700.43470983699543436No Hit
TTCGTCGATTTCTTCCAGAGAAACCAGGTCGTAGCGACGGTGGG13990.32521874970941855No Hit
GGACATAGCACCGTCGAAAATCAGGGTCGCTTTCTTACCTTTTT13260.30824879350585344No Hit
GATGCAACGCTGCAGGTTCGGTTGAATCGATATCGCCGCTCATT10850.25222469151874133No Hit
GAAACCCTGGTTGGCAACCGCAGATTCGTAACCCTGATCATAGA9900.23014050193875937No Hit
CTTACCGGAGTCCTTCAGACCACGGATGACAGTGCCAACGCCAC9170.2131705457351943No Hit
ACGTACTTCCCTTGACCATGAATTAGCGCAATCAGCCGTTGTAG7990.18573965762532196No Hit
GTTACGGGTAGACGGGCTCTGGACGTCACCAACGCCGGAAATAC7540.17527872571901473No Hit
ACCCTGGTAACCTGCATCCAGCAGAGAGTTCAGCGGTTCGATCG7380.1715592832634388No Hit
TTCCAGTTTGTCCGCCTGTTCCATCCAAGCACGCAGCATCTCGT5720.13297006778683876No Hit
ACCCTCCAGCGCCAGCAGACCGCCGCCGGTACGGGAGTCCGGCA5590.12994802079168333No Hit
AGACGGAGATTCGTATACGAAAGACTCGTCGCTGACAGTCTGGA5410.12576364802916043No Hit
ACCCTGCGCTACCACCATGTCACCGTGGATCAGTGGTTCGGAAC4970.11553518127632668No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4550.10577164483043992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)