FastQCFastQC Report
Wed 31 May 2023
EGAF00007929933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430172
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACAAAGTATACACCAAGGTGATGGGTC253635.896013687548236No Hit
TCTCACGAACAGGGTGTAATTGCAGAAAACG154893.6006527621509536No Hit
AACTACGCGGAGGAAATCCCGCAGGATCCGG102972.393693685316571No Hit
TCTGCATGCACCGGTATCTCCTTCCTGGCGG83061.9308555647508436No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT69721.6207470500172023No Hit
GAGATGACTTTCGCTGGCAAATACGATGAAC63581.478013445784477No Hit
GCTAAAGAAGAAAAAGAGCGTGCCGCGCTGG61271.4243139953320998No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59941.393396129920125No Hit
CTGGGCATCCGCGTGATCCCGGAAATTTCTC56641.3166826292738718No Hit
ACCGCTCAGAGCGACTACTTCCTGTCTTACT46301.0763136605822787No Hit
CAGGTGGTTTATGGCCTGCTGGACAAACTGA37410.8696521391443424No Hit
TGCAACGGCATCCTGAAGGAACTGCTGTCCA29280.6806579693703914No Hit
GTGTCCGGCGAGGTAAACGGCCACGCAGTTC23840.5541969258808105No Hit
GGTACCTTCTCCTCTAGCACTTCTATGGATG23830.553964460727337No Hit
AACGAAAAATGGCGTAAATATAAACTGACCG21170.49212872990338746No Hit
AAAGACGTACTGGCTCCGGGCCACCCGTTCC20790.48329505407139467No Hit
GAGGTGCGCAGCAAATCCGACCCAATTATGC17960.4175074156383958No Hit
GGCCCGTTCTCTATCAACAACGACAAACAGG15850.3684572682554885No Hit
GGCATCTATTTCAAACCGGAACTGATGCCGA13470.3131305617287969No Hit
GACTTCGGCCGCTACGCGACCGGTGATGGTA10450.24292608537980157No Hit
AACCTGATGCGCATCGACGGTAACCCGGCCA9540.2217717564137136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9000.20921863812614488No Hit
GAATTTATTAACGGTCTAGCCAGCCGTTCAT8700.20224468352194008No Hit
GTTTCCGGTCTGATTTGCCGTAAAGCACAGC7690.17876570302111713No Hit
CCAGCGGAAGTACGCGTGTTGGTGTAACCGT7360.17109435295649184No Hit
AACTACGGCACCCTGGGCTACATCCACAACA7230.1680723059613364No Hit
CTGACCGTTCCAGACATGATACTCACATTGG5450.1266935086430544No Hit
ATGGCTCGCTTCGTTTCTGAAGAAAAAGCAT5320.123671461647899No Hit
CTGGACGTTCTGTACTCCACCGTGGAAAACG5280.122741601034005No Hit
GACGCGTGCCCGCAGCTGAAAACCACTGCAC5050.11739490250411463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4510.10484178421654594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)