FastQCFastQC Report
Wed 31 May 2023
EGAF00007929935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294234
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40961.3920892894770829No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16160.5492227274890054No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15620.5308699878328134No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14250.4843084075939559No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11160.37928995289463485No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10340.3514209778611581No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9920.337146624795231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9690.32932971716389No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8350.2837877335725987No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6830.23212817009591008No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6790.23076870789915507No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5200.1767300855781453No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4890.1661942535532943No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4790.1627955980614069No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT4790.1627955980614069No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4580.15565842152844334No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4410.14988070719223473No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT4370.14852124499547978No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC4250.1444428584052149No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4080.1386651440690063No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4060.13798541297062883No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG3930.1335671608311752No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3830.13016850533928778No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3420.1162340178225494No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3310.11249549678147325No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG3270.1111360345847183No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3120.10603805134688717No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG3100.10535832024850969No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC2970.10094006810905606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)