FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences271658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45051.6583351125311971No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37721.388510553710916No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14790.5444345463781667No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13100.48222397278931595No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10480.3857791782314528No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9540.3511768473595477No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9420.3467595285248364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8700.3202556155165686No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7530.27718675687813354No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6310.23227734872523542No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6020.2216021615413498No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4740.17448409397109602No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT4350.1601278077582843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4320.1590234780496065No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4310.15865536814671388No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT4040.14871640076861348No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4020.14798018096282825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3680.1354644442644796No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3670.135096334361587No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3600.13251956504133874No Hit
TACTTCGATGGTTATGACCAGCAGTCTGTAG3570.13141523533266092No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC3550.1306790155268757No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3460.12736602640084224No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3430.12626169669216442No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3220.11853138873141966No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG3050.11227352038224532No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3030.11153730057646011No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG2930.10785620154753403No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG2820.10380699261571535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)