FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61501.6475921044171542No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31920.8551404873657815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7090.18994191902955485No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7040.18860241325360594No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6680.17895797166677382No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6050.16208019888981762No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5820.15591847232045267No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5810.15565057116526287No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5700.15270365845817527No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5660.15163205383741615No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5560.14895304228551834No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5530.148149338819949No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.14573822842324097No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5150.13796909492273732No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5120.13716539145716797No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4950.1326110718189417No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4940.1323431706637519No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4820.12912835680147453No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4540.12162712445616065No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4100.10983947362781028No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4060.10876786900705115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3910.10474935167920443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)