FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408624
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21160.5178354673244842No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20680.5060887270449117No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16310.3991444457496378No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT15760.3856846391792944No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12620.3088413798504248No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12110.29636046830337914No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11680.2858373468029288No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT11650.28510317553545556No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11560.28290066173303574No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11430.27971925290731825No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10920.2672383413602725No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10740.26283331375543284No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10440.2554916010807001No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10420.25500215356905126No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10340.25304436352245585No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8830.21609107639296762No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8650.21168604878812797No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8210.20091820353185325No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8170.1999393085085555No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7800.19088452954305182No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6890.1686146677630291No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6870.16812522025138024No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6510.15931516504170093No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5880.14389756842476215No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5770.14120560711069344No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5730.14022671208739576No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5700.13949254081992246No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5280.1292141430752966No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5170.12652218176122793No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4880.11942519284231959No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4760.11648850777242648No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4240.10376287246955636No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4190.10253925369043423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)