FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408624
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA46591.140167978385998No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26210.6414209640158189No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22970.5621304671287051No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20970.51318571596382No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20940.5124515446963468No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15580.3812796115744547No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14920.3651278436900427No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12730.31153334116449355No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12730.31153334116449355No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG12650.3095755511178981No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11380.2784956341281961No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG11370.27825091037237165No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11310.2767825678374251No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9390.22979560671913543No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9220.2256353028701202No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9180.2246564078468225No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8540.20899408747405926No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8160.19969458475273114No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8100.19822624221778454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7910.19357649085712048No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7740.18941618700810525No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7130.17448803790281528No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6670.16323074513489175No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6230.15246289987861703No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6210.15197345236696816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5810.14218450213399114No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5240.1282352480519989No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4860.11893574533067074No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4820.11795685030737305No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG4350.10645483378362505No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4270.10449704373702963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4120.10082618739966326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)