FastQCFastQC Report
Sun 21 May 2023
EGAF00007929942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461031
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20460.4437879448453575No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19800.42947220468905567No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16920.36700352037064754No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT16830.36505137398569726No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA16480.35745969359977964No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG16240.352253969906579No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16150.3503018235216287No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG15610.3385889452119272No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13690.2969431556663218No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13590.29477410412748817No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13010.28219360520225323No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12890.27959074335565287No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10340.2242799291153957No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10090.21885730026831168No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9960.21603753326782799No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9820.21300086111346092No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9460.2051922755736599No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9250.2006372673421093No Hit
GAAGCGGATGTTTTTACGTTTCATTTCGCCGATGGTTTCACGAA9180.1991189312649258No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8920.19347939726395838No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8850.19196106118677486No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8520.18480319110862395No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8320.1804650880309567No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8280.17959746741542326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8160.17699460556882293No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7950.17243959733727232No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7940.17222269218338898No Hit
ATCACGCATCATCAGCTGGAAGGTTTTAATGCTTTCTGGGAAAC7360.15964219325815399No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC7110.15421956441107No Hit
GCCAATACCCTTCTGACGTTCCTGGAACCATTTCAGTTTATCCA6800.14749550464068578No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6760.1466278840251523No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5950.12905856656060005No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5910.1281909459450666No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5900.12797404079118324No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5880.12754023048341653No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5830.12645570471399972No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5790.12558808409846625No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5710.12385284286739937No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5620.12190069648244913No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5530.11994855009749886No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5520.1197316449436155No Hit
GAATGGTTCGTCGTCCTGCGGGCGACGGTAATCCGGCTGCAGTA5510.11951473978973214No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5370.11647806763536508No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5340.11582735217371501No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5330.11561044701983163No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5250.11387520578876474No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5060.10975400786498088No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5050.10953710271109753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)