FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461031
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28060.6086358617967121No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22880.496278992085131No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21230.46048964169437634No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20350.4414019881526405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19910.4318581613817726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19260.4177593263793541No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18940.41081836145508654No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA18900.4099507408395531No Hit
GAACCGATCTACGCTACCATCGACGACCTGG16880.36613589975511407No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA16490.357676598753663No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC15440.33490155759591No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15320.3322986957493097No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14820.3214534380551416No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14140.30670388759107303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13190.28609789797215374No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11830.25659879704401656No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10500.22775041157752948No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10360.22471373942316245No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9480.2056260858814266No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9370.20324012918870965No Hit
TTCGTGTCTCAGCACACCATGCCGCGTAGCT9190.19933583641880914No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9170.19890202611104243No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8190.177645321030473No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT8090.1754762694916394No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7970.17287340764503906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.1726565024911557No Hit
ATGGCCGACATCACTGAAACCCAGGAATCCC7930.1720057870295056No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7890.17113816641397217No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7800.16918602002902192No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG7550.1637633911819379No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6920.1500983664872861No Hit
AACACCCTGTGCGTACAGCTGAAGGCGAAAA6870.1490138407178693No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6250.1355657211771009No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6090.13209523871496712No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT6080.13187833356108375No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6030.13079380779166694No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5980.12970928202225013No Hit
GGTTTTGATAAACCGAATAAATCTCAGGCAA5970.12949237686836676No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5860.1271064201756498No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5800.12580498925234962No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5750.12472046348293282No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5690.12341903255963264No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5690.12341903255963264No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5640.12233450679021583No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5550.12038236040526559No Hit
GGTGATGCGGTGCGTGATGCTGTATTCAACG5340.11582735217371501No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5260.11409211094264811No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5160.1119230594038145No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5120.11105543878828104No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4980.10801876663391399No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4870.10563280994119702No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4760.10324685324848003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)