FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428405
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18500.4318343623440436No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18140.4234310990768082No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16770.3914520138653844No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15820.36927673579906867No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG15150.3536373291628249No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG14820.34593433783452576No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA14760.3445337939566531No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14470.3377644985469357No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13400.3127881327248748No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13010.3036845975187031No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11820.27590714394089705No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11650.2719389362869248No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9890.23085631586932925No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9700.2264212602560661No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9510.22198620464280294No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9420.2198853888259941No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9100.21241582147734037No Hit
GAAGCGGATGTTTTTACGTTTCATTTCGCCGATGGTTTCACGAA8360.1951424469835786No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8250.1925747832074789No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8230.19210793524818806No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8000.18673918371634318No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7970.1860389117774069No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7790.18183728014378917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7610.17763564851017144No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7560.17646852861194431No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7440.17366744085619917No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6670.15569379442350115No Hit
ATCACGCATCATCAGCTGGAAGGTTTTAATGCTTTCTGGGAAAC6540.15265928268811055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6520.1521924347288197No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6120.1428554755430025No Hit
GCCAATACCCTTCTGACGTTCCTGGAACCATTTCAGTTTATCCA6060.14145493166512996No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6010.1402878117669028No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5610.13095085258108566No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5610.13095085258108566No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5440.12698264492711336No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5340.12464840513065907No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC5270.12301443727314107No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5250.12254758931385021No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5240.12231416533420479No Hit
GAATGGTTCGTCGTCCTGCGGGCGACGGTAATCCGGCTGCAGTA5190.12114704543597765No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5080.11857938165987791No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5020.11717883778200534No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5020.11717883778200534No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5020.11717883778200534No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4890.11414432604661476No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4800.11204351022980591No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4680.10924242247406077No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4650.10854215053512448No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4470.10434051890150675No Hit
TTTACGCATTACCACTTTCTTGCCGTTACGGATGTAGATACCTG4380.10223970308469787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)