FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428405
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65191.5216909233085516No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25190.5879950047268356No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19270.44980800877674165No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19180.44770719295993283No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18640.43510229805907963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17560.40989250825737333No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA17080.39868815723439266No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16890.39425310162112953No Hit
GAACCGATCTACGCTACCATCGACGACCTGG15810.3690433118194232No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA15230.3555047209999883No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14230.33216232303544546No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC13900.3244593317071463No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13340.3113875888470023No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13310.31068731690806595No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11710.2733394801647973No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10980.25629952965068103No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10020.23389082760471983No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC9340.21801799698883068No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9300.21708430107024895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8320.1942087510649969No Hit
TTCGTGTCTCAGCACACCATGCCGCGTAGCT8290.19350847912606062No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8150.19024054341102462No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7800.1820707041234346No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7640.17833592044910773No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7330.17109977708009944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7060.16479732962967286No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7000.16339678575180028No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6780.15826145819960086No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6700.1563940663624374No Hit
ATGGCCGACATCACTGAAACCCAGGAATCCC6620.15452667452527397No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.1440225954412297No Hit
AACACCCTGTGCGTACAGCTGAAGGCGAAAA6110.14262205156335708No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6020.14052123574654823No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5750.13421878829612166No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5670.13235139645895824No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5660.1321179724793128No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5520.12885003676427678No Hit
GGTTTTGATAAACCGAATAAATCTCAGGCAA5480.1279163408456951No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5380.12558210104924078No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5210.1216138933952685No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5180.12091362145633222No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5170.12068019747668679No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5160.12044677349704136No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5150.12021334951739593No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4940.11531144594484193No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4920.11484459798555106No Hit
GGTGATGCGGTGCGTGATGCTGTATTCAACG4860.11344405410767848No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4740.11064296635193334No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4470.10434051890150675No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4470.10434051890150675No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4470.10434051890150675No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4410.10293997502363418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)