FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429787
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16760.38996060839439073No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13050.3036387792092362No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11100.25826746737337336No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9270.21568823626587122No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8990.2091733812330294No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8550.19893575189570645No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8370.1947476308031653No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8360.19451495740913524No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7530.17520306570463975No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7470.17380702534045936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7440.17310900515836916No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7230.16822286388373775No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6980.16240602903298612No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6830.1589159281225351No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAGTGT6500.15123770611954296No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6470.15053968593745276No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6010.13983670981206972No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5350.12448026580608533No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5230.12168818507772455No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5160.12005947131951408No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5110.11889610434936376No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5080.11819808416727356No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT5070.1179654107732435No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4710.10958916858816112No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4470.10400500713143952No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4440.10330698694934932No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4350.10121292640307873No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT4330.1007475796150186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)