FastQCFastQC Report
Wed 31 May 2023
EGAF00007929947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429787
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67151.5624018409118934No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28660.6668419472901693No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17130.39856952397350315No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC14130.3287675057644833No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11120.25873281416143346No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC10850.2524506325226217No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9150.21289615553751043No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9080.2112674417793No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8960.20847536105093917No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8150.18962881613450383No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8030.18683673540614304No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7930.1845100014658424No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7830.1821832675255417No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7590.17659910606882015No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7210.16775751709567763No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7180.16705949691358743No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7180.16705949691358743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7160.1665941501255273No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6650.15472780702999392No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6640.15449513363596387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6120.14239611714640044No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5490.12773769332250628No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5450.12680699974638598No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5140.11959412453145396No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4920.11447530986279249No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4820.11214857592249183No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG4780.11121788234637157No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4720.10982184198219118No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4410.10260896676725913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)