FastQCFastQC Report
Sun 21 May 2023
EGAF00007929948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446864
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16300.36476422356690175No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13140.29404919617601777No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11930.26697160657381214No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9750.21818718894339217No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9340.20901213792115722No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9190.2056554119374127No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9030.20207490422141858No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8560.19155716280568585No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8050.18014429446095456No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7940.1776826954062086No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7700.1723119338322174No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7690.17208815209996778No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7670.1716405886354685No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7300.1633606645422321No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAGTGT6640.1485910702137563No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6150.1376257653335243No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6110.13673063840452576No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5690.12733180565004118No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5470.12240860754054925No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5450.12196104407604998No Hit
GAACGGCAGGCTAGAACCACGGCGGCCGCGACGACCTTCTTTTT5400.12084213541480181No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5170.11569515557306026No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5070.11345733825056394No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4860.10875792187332164No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4780.10696766801532456No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4710.10540119588957715No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4660.10428228722832898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)