FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007929949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446864
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62681.4026638977406996No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30240.6767159583228902No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16780.3755057467148842No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC15020.33612016183894877No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12430.27816069318629383No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC11130.24906906799384154No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10070.22534820437538042No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9360.20945970138565648No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8750.19580901571842885No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8670.1940187618604318No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8310.185962619499445No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8120.18171076658670202No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8080.18081563965770348No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8030.1796967309964553No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7960.17813025887070788No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7820.174997314619213No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7640.1709692434387196No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7490.1676125174549751No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6960.15575208564574458No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6810.15239535966200007No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6020.13471660281427908No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5620.12576533352429375No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5570.12464642486304557No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG5420.12128969887930108No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5230.11703784596655807No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5160.11547137384081063No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4980.11144330266031723No Hit
GCAGTCAACGAACTGACCTTCCCGGGTTCTG4960.11099573919581797No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4580.10249203337033193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)