FastQCFastQC Report
Sun 21 May 2023
EGAF00007929951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007929951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434705
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34090.7842099814816945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23630.5435870302849058No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22370.514601856431373No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17020.39152988808502315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16680.38370849196581586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14460.332639376128639No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13720.3156163375162467No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13600.31285584476829115No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13210.3038842433374357No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12660.29123198490930635No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12030.2767393979825399No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8280.1904739996089302No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7810.17966206967943776No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7660.1762114537444934No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA6960.1601085793814196No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6910.15895837406977145No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6610.15205714219988267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.1513670190128938No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5810.1336538572135126No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5430.12491229684498684No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.11364028479083517No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4870.11202999735452777No Hit
GTGATGTTTCCGCCGCAGTCCGTGCTGTCCC4800.11041970991822041No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4720.10857938141958341No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4610.1060489297339575No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4450.10236827273668349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)